first or co-first author
AI & ML Methods
- Nature Biotechnology · 2025A platform for the biomedical application of large language models
- Cancer Research Communications · 2024A Bioinformatics Tool for Identifying Intratumoral Microbes from the ORIEN Dataset
- Nature Communications · 2023Single-cell biological network inference using a heterogeneous graph transformer
- Nature Communications · 2021scGNN is a novel graph neural network framework for single-cell RNA-Seq analyses
Tools, Databases & Web Servers
- Nature Communications · 2024A single-cell and spatial RNA-seq database for Alzheimer's disease (ssREAD)
- Computational and Structural Biotechnology Journal · 2022DESSO-DB: A web database for sequence and shape motif analyses and identification
- iScience · 2020scREAD: A Single-Cell RNA-Seq Database for Alzheimer's Disease
- Nucleic Acids Research · 2020IRIS3: integrated cell-type-specific regulon inference server from single-cell RNA-Seq
- PLOS Computational Biology · 2019IRIS-EDA: An integrated RNA-Seq interpretation system for gene expression data analysis
Translational & Disease Studies
- European Heart Journal · 2025Common and divergent cellular aetiologies underlying hypoplastic left heart syndrome and hypoplastic right heart syndrome
- Immunity · 2025Multi-scaled transcriptomics of chronically inflamed nasal epithelium reveals immune-epithelial dynamics and tissue remodeling in nasal polyp formation
- Circulation · 2024Abnormal Progenitor Cell Differentiation and Cardiomyocyte Proliferation in Hypoplastic Right Heart Syndrome
- Circulation Research · 2024Cell-Free RNA Signatures in Maternal Blood with Fetal Congenital Heart Disease
- Circulation Research · 2023Impaired Human Cardiac Cell Development due to NOTCH1 Deficiency
- Journal of Medical Virology · 2023Identification of HPV oncogene and host cell differentiation associated cellular heterogeneity in cervical cancer via single-cell transcriptomic analysis
- Nature Communications · 2022Microglia coordinate cellular interactions during spinal cord repair in mice
- Nature Aging · 2022NIH SenNet Consortium to map senescent cells throughout the human lifespan to understand physiological health
- Acta Neuropathologica Communications · 2022Spatially resolved transcriptomics reveals genes associated with the vulnerability of middle temporal gyrus in Alzheimer's disease
- Acta Neuropathologica · 2022Wolframin is a novel regulator of tau pathology and neurodegeneration